API and modules

• pytranskit.optrans.continuous package
  • base transform
    • BaseMapper2D
      • BaseMapper2D.apply_forward_map()
      • BaseMapper2D.apply_inverse_map()
    • BaseTransform
      • BaseTransform.apply_forward_map()
      • BaseTransform.apply_inverse_map()
      • BaseTransform.forward()
      • BaseTransform.inverse()
    • assert_equal_shape()
    • check_array()
    • griddata2d()
    • interp2d()
  • cdt
    • BaseTransform
      • BaseTransform.apply_forward_map()
      • BaseTransform.apply_inverse_map()
      • BaseTransform.forward()
      • BaseTransform.inverse()
    • CDT
      • CDT.displacements_
      • CDT.transport_map_
      • CDT.apply_forward_map()
      • CDT.apply_inverse_map()
      • CDT.forward()
      • CDT.inverse()
    • assert_equal_shape()
    • check_array()
    • interp()
    • signal_to_pdf()
  • clot
    • CDT
      • CDT.displacements_
      • CDT.transport_map_
      • CDT.apply_forward_map()
      • CDT.apply_inverse_map()
      • CDT.forward()
      • CDT.inverse()
    • CLOT
      • CLOT.displacements_
      • CLOT.transport_map_
      • CLOT.displacements_initial_
      • CLOT.transport_map_initial_
      • CLOT.cost_
      • CLOT.curl_
      • CLOT.apply_forward_map()
      • CLOT.apply_inverse_map()
      • CLOT.forward()
    • assert_equal_shape()
    • check_array()
    • dct()
    • griddata2d()
    • idct()
    • interp2d()
    • signal_to_pdf()
  • radoncdt
    • BaseTransform
      • BaseTransform.apply_forward_map()
      • BaseTransform.apply_inverse_map()
      • BaseTransform.forward()
      • BaseTransform.inverse()
    • CDT
      • CDT.displacements_
      • CDT.transport_map_
      • CDT.apply_forward_map()
      • CDT.apply_inverse_map()
      • CDT.forward()
      • CDT.inverse()
    • RadonCDT
      • RadonCDT.displacements_
      • RadonCDT.transport_map_
      • RadonCDT.apply_forward_map()
      • RadonCDT.apply_inverse_map()
      • RadonCDT.forward()
      • RadonCDT.inverse()
    • assert_equal_shape()
    • check_array()
    • iradon()
    • match_shape2d()
    • radon()
    • signal_to_pdf()
  • radoncdt3D
    • BaseTransform
      • BaseTransform.apply_forward_map()
      • BaseTransform.apply_inverse_map()
      • BaseTransform.forward()
      • BaseTransform.inverse()
    • CDT
      • CDT.displacements_
      • CDT.transport_map_
      • CDT.apply_forward_map()
      • CDT.apply_inverse_map()
      • CDT.forward()
      • CDT.inverse()
    • RadonCDT3D
      • RadonCDT3D.apply_inverse_map()
      • RadonCDT3D.dRamp()
      • RadonCDT3D.forward()
      • RadonCDT3D.get_rotation_matrix()
      • RadonCDT3D.inverse()
      • RadonCDT3D.iradon_3D()
      • RadonCDT3D.radon_3D()
      • RadonCDT3D.rotate3D()
      • RadonCDT3D.sample_sphere()
    • assert_equal_shape()
    • check_array()
    • fft()
    • fftshift()
    • ifft()
    • signal_to_pdf()
  • scdt
    • SCDT
      • SCDT.calc_scdt()
      • SCDT.gen_inverse()
      • SCDT.istransform()
      • SCDT.itransform()
      • SCDT.stransform()
      • SCDT.transform()
    • interp()
• pytranskit.optrans.decomposition package
  • CCA
    • CCA
      • CCA.components_
      • CCA.components_y_
      • CCA.explained_variance_
      • CCA.explained_variance_y_
      • CCA.mean_
      • CCA.mean_y_
      • CCA.n_components_
      • CCA.fit()
      • CCA.fit_transform()
      • CCA.inverse_transform()
      • CCA.score()
      • CCA.transform()
    • CanonCorr
    • check_array()
  • PLDA
    • BaseEstimator
      • BaseEstimator.get_params()
      • BaseEstimator.set_params()
    • PLDA
      • PLDA.components_
      • PLDA.explained_variance_
      • PLDA.explained_variance_ratio_
      • PLDA.mean_
      • PLDA.n_components_
      • PLDA.coef_
      • PLDA.intercept_
      • PLDA.class_means_
      • PLDA.classes_
      • PLDA.decision_function()
      • PLDA.fit()
      • PLDA.fit_transform()
      • PLDA.inverse_transform()
      • PLDA.predict()
      • PLDA.predict_log_proba()
      • PLDA.predict_proba()
      • PLDA.predict_transformed()
      • PLDA.score()
      • PLDA.transform()
    • accuracy_score()
    • check_array()
    • eigh()
• pytranskit.optrans.utils package
  • data_utils
    • griddata2d()
    • interp2d()
    • match_shape2d()
    • signal_to_pdf()
  • validation
    • assert_all_finite()
    • assert_equal_shape()
    • check_array()
    • check_decomposition()
  • visualize
    • plot_displacements2d()
• pytranskit.classification package
  • cdt_ns
    • CDT_NS
      • CDT_NS.add_trans_samples()
      • CDT_NS.cdt_parallel()
      • CDT_NS.fit()
      • CDT_NS.fun_cdt_batch()
      • CDT_NS.fun_cdt_single()
      • CDT_NS.predict()
  • rcdt_ns
    • RCDT_NS
      • RCDT_NS.add_trans_samples()
      • RCDT_NS.fit()
      • RCDT_NS.fun_rcdt_batch()
      • RCDT_NS.fun_rcdt_single()
      • RCDT_NS.predict()
      • RCDT_NS.rcdt_parallel()
  • rcdt_ns_3d
    • RCDT_NS_3D
      • RCDT_NS_3D.add_trans_samples()
      • RCDT_NS_3D.fit()
      • RCDT_NS_3D.fun_rcdt_batch()
      • RCDT_NS_3D.fun_rcdt_single()
      • RCDT_NS_3D.predict()
      • RCDT_NS_3D.rcdt_parallel()
  • scdt_nls
    • SCDT_NLS
      • SCDT_NLS.calc_scdt()
      • SCDT_NLS.enrichment()
      • SCDT_NLS.find_kN()
      • SCDT_NLS.fit()
      • SCDT_NLS.predict()
      • SCDT_NLS.score()
  • scdt_ns
    • SCDT_NS
      • SCDT_NS.add_trans_samples()
      • SCDT_NS.calc_scdt()
      • SCDT_NS.fit()
      • SCDT_NS.predict()
  • utils
    • dataset_config()
    • load_data()
    • load_data_1D()
    • load_data_3D()
    • new_index_matrix()
    • take_samples()
    • take_train_samples()
    • take_train_val_samples()
• pytranskit.TBM package
  • TBM_CLOT
  • TBM_PLOT
    • L2_distance()
    • PLOT_CCA
      • PLOT_CCA.plot_cca()
      • PLOT_CCA.visualize()
    • PLOT_NS_Classifier
      • PLOT_NS_Classifier.classify_PLOT_NS()
      • PLOT_NS_Classifier.fit()
      • PLOT_NS_Classifier.predict()
      • PLOT_NS_Classifier.score()
    • PLOT_PCA
      • PLOT_PCA.plot_pca()
      • PLOT_PCA.visualize()
    • PLOT_PLDA
      • PLOT_PLDA.plot_plda()
      • PLOT_PLDA.visualize()
    • Visualize_LOT()
    • batch_PLOT
      • batch_PLOT.forward_seq()
    • batch_PLOT_v0
      • batch_PLOT_v0.forward_seq()
    • fromInd2Coord()
    • gaussian2D()
    • get_particles()
    • img2pts_Lloyd()
    • pLOT_single()
    • particle2image()
    • particleApproximation()
    • particleApproximation_v0()
    • sub2ind()
  • TBM_RCDT
    • RCDT_CCA
      • RCDT_CCA.rcdt_cca()
      • RCDT_CCA.visualize()
    • RCDT_NS_Classifier
      • RCDT_NS_Classifier.classify_RCDT_NS()
      • RCDT_NS_Classifier.fit()
      • RCDT_NS_Classifier.predict()
      • RCDT_NS_Classifier.score()
    • RCDT_PCA
      • RCDT_PCA.rcdt_pca()
      • RCDT_PCA.visualize()
    • RCDT_PLDA
      • RCDT_PLDA.rcdt_plda()
      • RCDT_PLDA.visualize()
    • batch_RCDT
      • batch_RCDT.forward()
      • batch_RCDT.forward_seq()
      • batch_RCDT.fun_ircdt_batch()
      • batch_RCDT.fun_ircdt_single()
      • batch_RCDT.fun_rcdt_batch()
      • batch_RCDT.fun_rcdt_single()
      • batch_RCDT.inverse()
      • batch_RCDT.ircdt_parallel()
      • batch_RCDT.rcdt_parallel()